研究業績
2019
原著論文
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Pathogenic Epigenetic Consequences of Genetic Alterations in IDH-wild-type Diffuse Astrocytic Gliomas.
Fumiharu Ohka, Keiko Shinjo, Shoichi Deguchi, Yusuke Matsui, Yusuke Okuno, Keisuke Katsushima, Miho Suzuki, Akira Kato, Noboru Ogiso, Akane Yamamichi, Kosuke Aoki, Hiromichi Suzuki, Shinya Sato, Nirmala Arul Rayan, Shyam Prabhakar, Jonathan Göke, Teppei Shimamura, Reo Maruyama, Satoru Takahashi, Akio Suzumura, Hiroshi Kimura, Toshihiko Wakabayashi, Hui Zong, Atsushi Natsume and Yutaka Kondo. Cancer Research (2019). DOI: 10.1158/0008-5472.CAN-19-1272 |
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A Network of Networks Approach for Modeling Interconnected Brain Tissue-Specific Networks
Hideko Kawakubo, Yusuke Matsui, Itaru Kushima, Norio Ozaki, Teppei Shimamura. (2019) Bioinformatics. btz032 |
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Tumor subclonal progression model for cancer hallmark acquisition.
Matsui Y, Miyano S, Shimamura T. (2019) Lecture Notes in Bioinformatics (In press) |
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GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics.
Shimamura T, Matsui Y, Kajino T, Ito S, Takahashi T and Miyano S. (2019) Lecture Note in Bioinformatics (In press) |
2018
原著論文
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A temporal shift of the evolutionary principle shaping intratumor heterogeneity in colorectal cancer.
Tomoko Saito, Atsushi Niida, Ryutaro Uchi, Hidenari Hirata, Hisateru Komatsu, Shotaro Sakimura, Shuto Hayashi, Sho Nambara, Yosuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Takaaki Masuda, Keishi Sugimachi, Taro Tobo, Haruto Nishida, Tsutomu Daa, Kenichi Chiba, Yuichi Shiraishi, Tetsuichi Yoshizato, Masaaki Kodama, Tadayoshi Okimoto, Kazuhiro Mizukami, Ryo Ogawa, Kazuhisa Okamoto, Mitsutaka Shuto, Kensuke Fukuda, Yusuke Matsui, Teppei Shimamura, Takanori Hasegawa, Yuichiro Doki, Satoshi Nagayama, Kazutaka Yamada, Mamoru Kato, Tatsuhiro Shibata, Masaki Mori, Hiroyuki Aburatani, Kazunari Murakami, Yutaka Suzuki, Seishi Ogawa, Satoru Miyano & Koshi Mimori, Nature Communications. 2018;9:2884. doi:10.1038/s41467-018-05226-0. |
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Identification of Cardiomyocyte-Fated Progenitors from Human-Induced Pluripotent Stem Cells Marked with CD82.
Takeda M, Kanki Y, Masumoto H, Funakoshi S, Hatani T, Fukushima H, Izumi-Taguchi A, Matsui Y, Shimamura T, Yoshida Y, Yamashita JK. (2018) Cell Reports ;22(2):546-556. doi: 10.1016/j.celrep.2017.12.057. |
2017
原著論文
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ER stress signaling promotes the survival of cancer 'persister cells' tolerant to EGFR tyrosine kinase inhibitors. Cancer Res.
Terai H, Kitajima S, Potter DS, Matsui Y, Gutierrez Quiceno L, Chen T, Kim TJ, Rusan M, Thai TC, Piccioni F, Donovan KA, Kwiatkowski N, Hinohara K, Wei G, Gray NS, Fischer ES, Wong KK, Shimamura T, Letai A, Hammerman PS, Barbie DA. (2017) Cancer Res; pii: canres.1904.2017. doi: 10.1158/0008-5472.CAN-17-1904. |
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phyC: Clustering cancer evolutionary trees.
Matsui Y, Niida A, Uchi R, Mimori K, Miyano S, Shimamura T (2017) PLoS Comput Biol 13(5): e1005509 |
国際会議プロシーディングス
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Tumor subclonal progression model for cancer hallmark acquisition.
Matsui Y, Miyano S, Shimamura T. (2017) Proceedings of CIBB2017 |
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GIMLET: Identifying Biological Modulators in Context-Specific Gene Regulation Using Local Energy Statistics.
Shimamura T, Matsui Y, Kajino T, Ito S, Takahashi T and Miyano S. (2017) Proceedings of CIBB2017 |
2016
原著論文
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NECAB3 Promotes Activation of Hypoxia-inducible factor-1 during Normoxia and Enhances Tumourigenicity of Cancer Cells.
Nakaoka H.J, Hara T, Yoshino S, Kanamori A, Matsui Y, Shimamura T, Sato H, Murakami Y, Seiki M, Sakamoto T. (2016) Sci Rep. 7;622784 |
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D3M：Detection of differential distributions of methylation levels.
Matsui Y, Mizuta M, Ito S, Miyano S, and Shimamura T. (2016) Bioinformatics. Btw138: 1-8. |